Tech Stack

What I use to develop

Languages

Python
MATLAB
LabVIEW
Bash/Shell
R

Machine & Deep Learning

PyTorch
TensorFlow
JAX

Infrastructure

Git
Zeromq SVG Icon
ØMQ
Apptainer (Singularity)
Docker
Linux

Scientific Computing

NumPy
pandas
scipy
matplotlib
Jupyter
OpenCV
scikit-learn
statsmodels
pytest

Experimental Stack

What I use to discover

Behavioral Analysis

DeepLabCut
SLEAP
MotionMapper

Neural Analysis & Simulation

CaImAn
NEURON
FieldTrip
Inscopix

Vocal Analysis

AVA
vocalpy
librosa

Experimentation

Behavioral Assays
Neural Recording
in vivo LFP and single units
in vitro patch-clamp

Neural Manipulation

Infusions
Optogenetics

Histology

Perfusion
Dissection
Slicing
Staining
Imaging